Enduring evolutionary embellishment of cloudinids in the Cambrian

The Ediacaran–Cambrian transition and the following Cambrian Explosion are among the most fundamental events in the evolutionary history of animals. Understanding these events is enhanced when phylogenetic linkages can be established among animal fossils across this interval and their trait evolution monitored. Doing this is challenging because the fossil record of animal lineages that span this transition is sparse, preserved morphologies generally simple and lifestyles in the Ediacaran and Cambrian commonly quite different. Here, we identify derived characters linking some members of an enigmatic animal group, the cloudinids, which first appeared in the Late Ediacaran, to animals with cnidarian affinity from the Cambrian Series 2 and the Miaolingian. Accordingly, we present the first case of an animal lineage represented in the Ediacaran that endured and diversified successfully throughout the Cambrian Explosion by embellishing its overall robustness and structural complexity. Among other features, dichotomous branching, present in some early cloudinids, compares closely with a cnidarian asexual reproduction mode. Tracking this morphological change from Late Ediacaran to the Miaolingian provides a unique glimpse into how a primeval animal group responded during the Cambrian Explosion.


Introduction
Biotic replacement during the Ediacaran-Cambrian transition separated the Proterozoic and Phanerozoic faunas, and represents one of the most remarkable evolutionary events in the history of life [1]. It was followed by the Cambrian Explosion, during which the fossil record of various extant animal phyla began to appear, along with the Earth's first complex ecosystem engineering [2]. Following the putative extinction of the Ediacaran biota, animals showed significant increase in diversity and disparity over a relatively short interval of geological time during which origination rates greatly exceeded extinction rates [3]. The Cambrian Explosion led to defensive strategies against predation, including significant size increase [4]. However, the framework on which this novelty was built remains shrouded because Ediacaran antecedents are unknown, evidence of lineages spanning the Ediacaran-Cambrian transition and the Cambrian Explosion being scant. Establishing phylogenetic linkage across this interval can help illuminate the sequence of innovations that occurred across it and thus has considerable implications. However, securing such links is challenging for several reasons. Most Ediacaran animals and their ecologies were profoundly different from the forms of Cambrian and later animals and their life habits, which, along with the challenge of establishing secure homology in these structurally simple forms, is a reason why making phylogenetic linkages between them has proven so challenging. Putative synapomorphies exist [5] but these are subtle and overwhelmed by distinct features of life in the Late Ediacaran ecosystem. Particular attention has focused on the evolution of the first biomineralizing organisms, partly because biomineralization is a major motif of Cambrian and later life. The earliest biomineralized animals occurred in the terminal Ediacaran and had tubular construction in general. Understanding their affinities, however, is challenging because of the relative morphological simplicity of these primeval structures, which are complicated by the apparent similarity shown by more derived metazoans. For example, the branching and the 'funnel in funnel' modular construction of the latest Ediacaran tubes have parallels in many groups of annelids such as serpulids and siboglinids [6]. Recent researches have used these and other features to link the latest Ediacaran organisms to particular triplobastic groups [7,8].
The genus Cloudina (for original taxonomic author citations see below) is a globally occurring fossil that epitomizes tubular organisms common in the Ediacaran assemblage [9][10][11]. The lightly biomineralized funnel-shaped skeleton of Cloudina marks the earliest known usage of skeletal calcium carbonate [12]. The predatory borings found in several skeletons of Cloudina [13,14] demonstrate that macrophagous predation was already present at that time. Recently, cloudinids were also discovered at the basal Terreneuvian (ca 539-521 Ma) [15,16], indicating that they were also present during the ongoing biotic replacement at the Ediacaran-Cambrian boundary. Despite the fact that Cloudina is one of the most studied Ediacaran organisms, its phylogenetic affinity has remained debated; suggestions including being a diploblastic metazoan such as a stem-or crown-group cnidarian [6,17] or an animal with annelid/bilaterian affinity [10,18].
Based on detailed observations on new and pre-existing materials, using MicroCT, here we present character analysis which shows that cnidarian-related organisms from Cambrian Series 2 (ca 521-509 Ma) and Miaolingian (ca 509-497 Ma), mainly Cambroctoconus, Lipopora and Tretocylichne (the CLT clade hereafter herein) were closely related to and probably descended from cloudinids. In doing this, we acknowledge that confidence in the homology of characters from simple morphology is limited, and that the origins of several metazoan phyla may lie within the group of biomineralized tubular organisms knows as cloudinomorphs [7,8]. These caveats notwithstanding, our results reveal a phylogenetic linkage with the CLT clade based on key characters whose basis as homologies is both comparably or better justified compared with those supporting other associations and more likely, given that the CLT clade is diploblastic. If correct, this indicates that cloudinids were animals with a cnidarian affinity, which survived the Ediacaran-Cambrian boundary, participating in the Cambrian Explosion, and diversified at least until the Miaolingian. By establishing this phylogenetic connection, we then chart the pattern of character innovation across this critical interval.

Material and methods
This study is grounded in detailed morphological comparison of different species of Ediacaran and Cambrian cloudinids collected worldwide. The specimens of Cloudina hartmannae were collected from the Lijiagou section in Shaanxi Province, China. Fossils of Cambroctoconus orientalis for this study are from the Miaolingian Zhangxia (Changhia) Formation at Xintai section (35°45 0 05 00 N, 117°46 0 22 00 E) in Shandong royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 Province [19]. Hundreds of silicified specimens of Ca. orientalis were collected, some of which were previously illustrated [19]. Specimens of Cambroctoconus coreaensis used in this study were previously described [20]. Three new specimens of Cambroctoconus koori were collected from North Greenland (see [21]). All the specimens of Cl. hartmannae, Ca. orientalis, Ca. coreaensis and Ca. koori are held in the Korea Polar Research Institute and given registered numbers prefixed with KOPRIF. Specimens of Cloudina lucianoi were recovered from the upper succession of the Late Ediacaran-Early Cambrian Tagatiya Guazu Formation (Itapucumi Group), Paraguay and were previously described [11,22]  royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 material, figure S1c-e). Specimens of Lipopora are deposited in the Department of Geology of the Australian National University, Canberra. All the type materials including the holotype and paratypes were analysed for this study. Specimens of Cambroctoconus and Lipopora were then coated with magnesium oxide and photographed by Canon EOS 60D, while images of the specimens of Ca. koori were taken by scanning electron microscope (JEOL JSM-6610) equipped at Korea Polar Research Institute. Those of Tretocylichne perplexa are housed in Macquarie University, and were imaged by a scanning electron microscope equipped at Australian Museum. Specimens of Cl. hartmannae, Ca. orientalis, Ca. koori, Ca. coreaensis, Lipopora lissa and L. daseia were analysed by X-ray microcomputed tomographic scanning, using the SkyScan 1172 system at the Dental Research Institute of Seoul National University, and the customized equipment housed in the Korea Institute of Geoscience and Mineral Resources (KIGAM). The scan parameters for each specimen varied depending on the size, shape and density of the specimen. Typical scans were acquired at 70 kV with a pixel size of 7.98 µm, 0.4°rotation per step.
A parsimony test was performed by using TNT v. 1.5 [23] under the traditional search with 10 random seeds, 100 replications of a random addition sequences, tree-bisection reconnection (TBR) branch swapping algorithm, saving 10 trees per replication. Sixteen ingroup taxa were included in the analysis, for which 23 characters were coded (see Character List and Character Matrix in the electronic supplementary material). Sinotubulites was selected as an outgroup, since it is a tubular fossil that occurred at latest Ediacaran, but lacked the typical funnel-in-funnel structure of cloudinids. All characters were equally weighted and unordered. Inapplicable and unknown character states were coded as '-', and '?', respectively. Polymorphic characters were coded as [01]. Additional phylogenetic analyses were performed for the same taxa and characters using both Bayesian and maximum likelihood methods. Maximum likelihood analysis was done in W-IQ-Tree online version [24]. The data matrix was also used for MrBayes v. 3.2.7, a program for phylogenetic inference using Bayesian statistics. The dataset was run on 5 000 000 generations and 0.1 burn infraction with lset rates as gamma.
In order to illustrate the morphological modifications detected in the cloudinids, we made a threedimensional (3D) model for each cloudinid species considered in this analysis and other 'cloudinomorphs' from Late Ediacaran and the first three Cambrian series, and conducted quantitative measurements. Volumetric reconstructions of scans were done in NRecon v. 1.6.9.3 software. Resulting image stacks were processed and segmented in 3D Slicer v. 4.10.1 and segmentation results were exported as .STL files, which then were imported into Blender v. 2.80 for cross-sectional views and 3D rendering. Some of the 3D reconstructions (the longitudinal-cut views of yellowish colour) for Ca. orientalis in figure 1 were made with a resolution of 12.97 µm per voxel using the SkyScan software CTVox32. For modelling, apertural/basal widths and height of cloudinid units were measured from published images that were selected to represent each cloudinid species. These numbers were used as the basic parameters of the funnel-shaped 3D model for the species. The volume of each cloudinid unit was measured using the volume statistics function of Print3D add-on. Once the basic shape was determined, the model was stacked to simulate funnel-in-funnel structure of cloudinids. To ensure the resulting 3D models appropriately reflect the shapes of reported cloudinid fossils, cross-sections were made as needed and compared with published images. For those species that could not be analysed by MicroCT, measurements were made directly from illustrated images previously published in the literature (see tables in the electronic supplementary material). To assess the changes in volumes and the ratios of wall thickness to apertural width of cloudinids through time, Mann-Whitney U-tests were done using Microsoft Excel (electronic supplementary material, table S3). For the measurements, a total of 28 specimens were used, nine for Ediacaran, four for Terreneuvian, six for the Series 2, nine for the Miaolingian.

General morphology of Cloudina
The morphology of Cloudina is characterized by the stacking of gradually expanding funnel-shaped modular elements (figure 1a-d) such that elements wider at the apertural end originate within the internal cavity of the preceding element. In the type species, Cl. hartmannae, there are transverse annulations on the outer surface of the funnel-shaped elements (figure 1a,c). Each funnel-like element is nested deeply within the preceding element, and they frequently flare aperturally to form flanges that may fuse to neighbouring flanges [17,18]. Dichotomous branching commonly occurs deep within royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 the parental funnel forming two daughter funnels of equal size, but recently, budding from the outside of the parental funnel has also been reported [25]. In Cloudina riemkeae the funnel-like elements are small and nested only shallowly [17]. The type specimen of Cloudina carinata were originally thought to occur in the terminal Ediacaran [26], but is now known to be basal Terreneuvian in age [27]. A particular morphological feature of Cl. carinata is its roughly eight-sided appearance assumed by longitudinal ridges on the outer surface (figure 1f ). It is also notable that some specimens of Cl. lucianoi show partial angularities in transverse sections of the funnel elements [28].

Funnel-in-funnel-shaped skeletons of the CLT clade
Lipopora from the Cambrian Stage 4 of New South Wales, Australia, includes two species, L. lissa (type species) and L. daseia. The genus was described as colonial, but commonly appears as solitary individuals [29]. The individual element has a holdfast at the most basal element. While L. lissa has 16 thin, short septa and smooth external wall (electronic supplementary material, figure  The reproductive mode of Ca. orientalis, the type species of the genus, was characterized by the budding of new elements from the outer surface, inner surface and the rim of the parental cup [19]. Detailed observation, both of the new materials and the previously documented specimens of Ca. orientalis [19] (figure 1u-af ), reveals an additional growth process that is distinct from budding. This begins with the appearance of a looped, band-like structure on the inner surface of the cup (figure 1u-x, ac-af ), which represents an initial growth of a funnel-shaped skeleton. The funnel-shaped skeleton is sometimes fused to the rim of the parental cup (figure 1aa,ab). Possible funnel-in-funnel structures may be also present in Ca. koori ( [21], fig. 3-2).
Tretocylichne perplexa was documented from the Wuliuan Stage (Miaolingian Series) of New South Wales, Australia [30]. It has a distinctly defined eight-sided skeleton with eight pairs of septa. The skeleton shows an open aperture at the base, so that the overall morphology forms a funnel-like structure with a holdfast and some degree of curvature (electronic supplementary material, figure S3). Budding from the outside of the parental funnel is represented by the holes in the skeletons (figure 1p; electronic supplementary material, figure S3a-d,j,k).

Comparison between Cloudina and the CLT clade
There are critical similarities between the CLT clade and the specimens that indisputably are ascribed to Cloudina. The production of funnel-shaped elements seen in Ca. orientalis and L. lissa is directly comparable to the funnel-shaped element of the type species of Cloudina (figure 1). For example, the stacking of funnel-shaped elements in L. lissa is almost identical in appearance to that in Cloudina (figure 1g), and even the cup-shaped elements of Ca. orientalis sometimes produced stacked funnel-infunnel morphology ( figure 1w,x). The eight-sided shape of the CLT clade skeleton is reminiscent of the roughly eight-sided appearance of the funnel element of Cl. carinata. Both the CLT clade and Cl. hartmannae show budding from the outside of the parental elements. Lipopora lissa and Cloudina show dichotomous branching as a mode of asexual reproduction, in which the diameter of the daughter element is significantly smaller than that of the parental element [18]. This was most likely formed by longitudinal fission of the parent element, an asexual reproduction mode only known in cnidarians [31]. It is noteworthy that such dichotomous branching has not been observed in other 'cloudinomorphs,' but to date only in Cloudina and Lipopora. The presence of transverse annulations in the outer surface of L. daseia is comparable to those in many Cloudina species (figure 1m,n; electronic supplementary material, figure S2i,j ). Cloudina skeletons show evidence of being to an extent malleable [17,18], which is similar to those observed in the skeletal wall of Cambroctoconus interpreted as highly integrated with soft tissue [19,32]. Given these striking similarities, we consider that the Cambrian CLT clade was closely related to Cloudina sensu stricto.
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 In addition to the morphological similarity, the ecological habitats were also comparable among these organisms. Cloudina is interpreted as an epibenthic 'mat-sticker' on soft substrates with partial anchoring [11]. It was also suggested that Cloudina tubes were oriented horizontally on a soft substrate [33,34], which is reminiscent of a Cambroctoconus colony growing horizontally on a substrate [19]. As for Cloudina [10,11,33,35], Ca. orientalis has frequently been associated with biostromes or bioherms [19,32], suggesting possibly similar ecological habitats throughout the Late Ediacaran and Cambrian.

Family Cloudinidae and included species
Cambroctoconus was originally considered as a stem-group Cnidaria [19]. Subsequently, it was revealed that Tretocylichne and Lipopora were closely related to Cambroctoconus [20], hence forming the CLT clade herein. By contrast, based on a hypothesis that Ca. koori has a close affinity to octocorals, the CLT clade was accommodated within a new order Cambroctoconida [21] which is questionably assigned to Octocorallia [36]. Here it suffices simply to acknowledge the CLT clade was related to cnidarians. As the CLT clade was closely related to Cloudina it is reasonable to accommodate the CLT clade within the family Cloudinidae [37]. Eleven cloudinid species are considered in this study (see electronic supplementary material, supplementary text for other cloudinids and 'cloudinomorphs' that are excluded in this present analysis). They are: Cloudina hartmannae [10]: Uppermost Ediacaran to basal Fortunian Stage, occurring worldwide. This is the type species of the genus Cloudina (figure 1a-d).
Cloudina riemkeae [10]: Nama Group (uppermost Ediacaran), Namibia. This species has frequently been regarded as a junior synonym of Cl. hartmannae. Given the morphology of the holotype, however, the funnel element of Cl. riemkeae overlaps shallowly to the parental element (electronic supplementary material, figure S8), whereas the funnel element of Cl. hartmannae overlaps deeply (electronic supplementary material, figure S8). Accordingly, we treat them as distinct taxa.
Cloudina carinata [26]: Membrillar olistostrome (basal Fortunian Stage), Badajoz Province, central Spain (figure 1f; electronic supplementary material, figure S1a,b). This species is characterized by having longitudinal ridges on the outer surface of elements, which give a roughly octaradial symmetry in dorsal view ( [26], fig. 7A). The age of Membrillar olistostrome was originally described as Late Ediacaran [26], but is considered as the earliest Terreneuvian in the most recent study [27]. A smaller specimen was also reported from the terminal Ediacaran interval of the Villarta Formation of the Ibor Group, central Spain [38], but we believe that the smaller size makes it distinct from the types of this species from the Membrillar olistostrome. There are two specimens of Cl. carinata reported from the Tamengo Formation, Brazil [39]. Although slightly larger, they are similar in morphology to the types of this species from the Membrillar olistostrome (electronic supplementary material, figure S8). Considering that the precise age interval of the fossil-bearing horizon within the Tamengo Formation is relatively poorly constrained and that the measurement of the thickness in the Brazilian specimens is hampered by the very small number of specimens, they are not considered in the present analysis.
Cloudina lucianoi [40]: Upper Ediacaran to basal Fortunian Stage of the Tagatiya Guazu Formation, Itapucumi Group, Paraguay (electronic supplementary material, figure S1c-e), and the Tamengo Formation of the Corumbá Group, Brazil. In Paraguay, this species was originally described to occur from the Late Ediacaran [11], but the uppermost fossil-occurring interval possible reaches the earliest Fortunian. Recent U-Pb Shrimp dating performed in a volcanic ash tuff located about 15 m above the uppermost Cloudina-bearing bed indicates depositional age of 545 ± 5.65 Ma [41]. However, the ongoing re-evaluation of these data possibly indicates younger depositional ages, which will allow placing this level already in the Early Cambrian. Similarly to the Paraguayan occurrences, the age of the specimens from the Tamengo Formation is interpreted as latest Ediacaran [28]; however, they also may be younger [42], as originally considered [40]. From the point of view of their general morphology, both specimens from Brazil and Paraguay are centimetric sinuous specimens constituted by nested and regularly spaced collars. Occasionally, some better-preserved specimens show rounded closed basal end (specially the samples from Tagatiya Guazu Formation). Detailed discussions about the age, taphonomy and taxonomy of Cl. lucianoi specimens from the Tagatiya Guazu Formation and the Tamengo Formation were given by previous studies [11,22,28]. Awaiting precise stratigraphic data, this study excludes measurement data from Cl. lucianoi specimens of the Tamengo Formation, Brazil [28], only considering the specimens from the uppermost Ediacaran to the basal Fortunian of the Itapucumi Group, Paraguay. As a result, it is inferred that the stratigraphic occurrence of Cl. lucianoi is similar to that of Cl. hartmannae (figure 2).
Cambroctoconus kyrgyzstanicus Peel [43]: Wuliuan Stage of Sauk Tanga, Alay range, western Kyrgyzstan [43]. Although septa were not described to be paired in the original description, given the location of septa ( [43], fig. 2A and F), it is likely that they actually were paired, as in other Cambroctoconus species.
Cambroctoconus coreaensis [20]: Daegi Formation (Drumian Stage) of the Taebaeksan Basin, Republic of Korea (electronic supplementary material, figure S10). The length of the element in this species is the longest of all cloudinids (figure 3). Due to poor preservations and frequent silica infillings, not much is known for this species. Nevertheless, the presence of rejuvenation in one specimen is observed in the longitudinal-cut view (electronic supplementary material, figure S10f ).
Cambroctoconus koori [21]: Henson Gletscher Formation (Cambrian Stage 4 to Wuliuan Stage), North Greenland (electronic supplementary material, figure S11). All the specimens are preserved as internal moulds [21] (electronic supplementary material, figure S11), but the rejuvenation of an element ( [21], fig. 3-2) and eight pairs of septa [21] (figure 1r) are recognizable. In MicroCT-rendered longitudinalcut views, the basal part appears to be thicker than the lateral walls (electronic supplementary material, figure S11). Since specimens are preserved as internal moulds, measuring of the wall thickness is not possible. The thick basal part of the internal moulds is comparable to the basal cavity seen in Ca. orientalis [20].
Lipopora lissa [29]:    This tree is made out of the four most parsimonious trees from a phylogenetic analysis (electronic supplementary material, figure S4). The Cambrian Series 2 to Miaolingian CLT clade (see text) is distinct from Cloudina species, with Cloudina carinata being its sister group. The cloudinid-like tubular organisms, Zuunia, Rajatubulus, Costatubus and Saarina are not clustered with the typical cloudinids in the strict consensus tree. Feiyanella is grouped with typical cloudinids by the presence of dichotomous branching, but see the main text for further information. Bars indicate stratigraphic ranges and colours indicate generic affiliation.
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 Tretocylichne perplexa [30]: Murrawong Creek Formation (Wuliuan Stage), New South Wales, Australia (figure 1p,q; electronic supplementary material, figure S3). The lower base of the element is consistently open, so that structurally it is more similar to funnel shape than cup shape. Of the CLT clade, this is the only species that does not show cup shape.

Phylogenetic analysis and morphological embellishment during Cambrian Explosion
In order to see how the morphological characters of cloudinids are distributed in phylogenetic context, we performed phylogenetic analyses with four species of Cloudina and seven species of the CLT clade, as well as other 'cloudinomorphs' occurring around the Ediacaran/Cambrian boundary. Parsimony test produced four most parsimonious trees with 42 tree lengths (CI of 0.595, RI of 0.770) (electronic supplementary material, figure S4), whose consensus tree shows a separate grouping of cloudinids (Cloudina species and the CLT clade) and Feiyanella, from other 'cloudinomorph' species, based on the presence of dichotomous branching (figure 2). Within cloudinids, Cloudina species from the Late Ediacaran and the basal Terreneuvian appear to form a stem group to the Cambrian Series 2 and Miaolingian CLT clade (figure 2); Cl. carinata is recognized as sister taxon of the CLT clade by having an octaradial symmetry. In the result of the Bayesian analysis, the lower cloudinids were not differentiated from the cloudinid-like tubular organisms (electronic supplementary material,  Figure 3. Elemental size of cloudinids and the cloudinid-like tubular organisms at a glance. There is a tendency of size increase through time in cloudinids, probably an expression of the Cambrian Explosion. The 'cloudinomorphs,' Zuunia, Saarina and Rajatubulus are distinguished from cloudinids not only by their sizes, but also by their elemental morphology and absence of branching. Note that the data for Cl. lucianoi were acquired from an interval across the Ediacaran/Cambrian boundary (see the main text).
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 figure S5a), while the result from the maximum likelihood approach supports a grouping of cloudinids (electronic supplementary material, figure S5b). Angularity in transverse section is frequently seen in Cl. lucianoi, but the transition towards regular octaradial symmetry appeared near the base of the Cambrian in Cl. carinata (figure 2). Since the Cambrian Explosion occurred before the pre-Miaolingian [3,44], the evolution of characteristics defining the CLT clade are here interpreted as novel strategies for surviving a progressive increase in predation pressure; through the Terreneuvian and the Early Cambrian Epoch 2, cloudinids evolved septa, cup-shaped morphology and probably a holdfast for better attachment. The largely Miaolingian Cambroctoconus and Tretocylichne are characterized by clear eight-sided shape, paired septa and the absence of serial construction but retain the funnel-in-funnel construction and other characters listed above that attest to their cloudinid origin (figure 2). Members of Cloudina itself are not yet known from the Cambrian stages 2 and 3 (figure 2), but there are some potential close relatives from this interval. Hydroconozoans are known as coralomorphs occurring from the Cambrian Stage 3 to early part of Cambrian Stage 4 [45] (figure 2). Although their morphology is poorly understood, being known only from thin sections, the cup-shape and tentative modular structures suggest that hydoroconozoans were related to cloudinids. The cryptic habit of hydroconozoans [45] is also comparable to that of Ca. orientalis [19,32]. Thus, apparently the cloudinid lineage began with a simple, round, funnel-in-funnel construction, and then acquired octaradial symmetry during the Ediacaran-Cambrian transition. Subsequently, the clade evolved cup shape, septa and the holdfast and, finally, paired septa. The funnel-in-funnel construction was progressively diminished, with cupbudding becoming the main constructional strategy. This pathway of morphological evolution connects the terminal Ediacaran Cloudina to the Miaolingian Cambroctoconus.

Discussion
The presence of octaradial symmetry and septa, and the reproduction mode of budding has placed the CLT clade at a stem-group cnidarian position [20], but an octocoral affinity for Cambroctoconus has also been suggested [21]. While soft-bodied evidence is required for precise determination, both interpretations affirm the cnidarian affinity for this group. Therefore, the striking morphological similarity between the CLT clade and cloudinids evince a cnidarian affinity of cloudinids [6,17]. The characteristic dichotomous branching present in Cloudina and Lipopora also corroborates the cnidarian affinity of cloudinids. This is consistent with the recently suggested non-bilaterian affinity of the cloudinomorphs from Namibia [34]. Accordingly, we conclude that typical cloudinids are the first convincing cnidarian-grade animals observed in the geologic record. Those 'cloudinomorph' animals with a 'through' gut [8] were apparently among other Late Ediacaran tube-dwelling organisms, but the absence of the funnel-in-funnel shape in these forms may differentiate them from cloudinids. Cloudinid-like tubular organisms such as Zuunia [7], Rajatubulus [15], Costatubus [46] and Saarina [47] can be distinguished from typical cloudinids by the shape and spacing of their repetitive elements (figure 3; electronic supplementary material, figure S6); their elements are notably stubby compared with those of Cloudina and close relatives, and show no overlapping of elements in longitudinal section images (figure 3; electronic supplementary material, figure S8). In addition, asexual reproduction including dichotomous branching shown in cloudinids, has not been documented from these genera. The elemental size of Zuunia and Rajatubulus are also significantly smaller than those of typical cloudinids (figure 3). In this study, Zuunia, Rajatubulus, Costatubus and Saarina are thus considered to be 'cloudinomorphs' distinguished from the true cloudinids. Recently, a bilaterian affinity was proposed for cloudinomorphs [7,8], which, if correct, suggests that their apparent similarity to typical cloudinids was a result of morphological convergence.
The cnidarian affinity of cloudinids in this study, however, leads us to propose an alternative hypothesis for the phylogenetic affinity of the cloudinid-like tubular organisms. Peridermal tubes of coronate scyphozoan polyps are chitinous exoskeleton which contains and protects the whole polypoid body [48]. The length of the tubes is from a few millimetres up to 1-2 cm [49], while the diameter of the tube is seldom over 1 mm at the aperture (electronic supplementary material, figure S7), being comparable to the size of the diminutive 'cloudinomorphs'. Prominent transverse rings and less prominent longitudinal striations are present on the outer surface of tubes [50]. Due to superficial similarities, they are often mistaken for polychaete tubes [51]. The soft polyps are highly elongate, and thus have a lengthy gastrovascular cavity that can retract deeply inside the tubes. Although many are solitary, some colonial species present asexual reproduction via branching or royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 8: 210829 budding [49,52,53]. Due partially to the presence of tetraradially or octoradially arranged cusps, these forms have been compared to conulariids and Corumbella [54,55], but the cusps are intermittently present at the inside of the tubes; and there are also species without cusps [56], which assume a similar shape and morphology to the tubes of the 'cloudinomorphs'.
The skeletal fauna of the terminal Ediacaran Nama Assemblage represents the first appearance of external hard parts in macroorganisms [57]. Until recently, typical Ediacaran organisms, both skeletal and soft-bodied, were thought to have become completely extinct, being replaced by distinctly different Early Cambrian fauna. Some researchers have proposed a mass extinction at this boundary [9], but growing evidence suggests a transitional replacement [58][59][60], at least regarding the occurrences of cloudinids from the Early Terreneuvian [15,16]. In either case, a notable biotic replacement near the Ediacaran-Cambrian boundary separates the Proterozoic and Phanerozoic faunas [1]. However, as demonstrated here, the recognition of the Cambrian Series 2 and Miaolingian CLT clade as cloudinids indicates that the lineage not only survived this replacement, but also endured the Cambrian Explosion which occurred mainly during the Terreneuvian and the Cambrian Epoch 2 [3,44], making cloudinids the first particular animal group of Ediacaran origin demonstrated to have diversified successfully in the Cambrian. Moreover, the evolution of novel features, such as holdfast, cup-shaped morphology, and septa, in the Cambrian Series 2 and Miaolingian CLT clade appear to have been structural innovations that helped cloudinids prosper during the Cambrian Explosion.
The morphological modifications through time are represented in the 3D model for each cloudinid species (figure 3; electronic supplementary material, figures S6 and S7) and the quantitative measurements on cloudinids from Late Ediacaran and the first three Cambrian series (figure 4). Overall, there was a progressive increase in the size of each element (funnel-shaped or cup-shaped) from the Ediacaran to the Miaolingian (figures 3 and 4a), but a marked increase in size is observed between the Ediacaran and the Terreneuvian, which is followed by a less prominent increase between the Terreneuvian and the Cambrian Series 2 (figure 4a). This result might indicate a dramatic morphological change in the cloudinid lineage in response to the increase in predation pressure occurred near the base of the Cambrian. This is in line with the notable increase in the wall thickness/aperture ratio between the Ediacaran and the Terreneuvian (figure 4b); the marked thickening of wall probably resisted increasing predation pressure after the start of the Cambrian. Furthermore, there is a notable increase in size from the Cambrian Series 2 to the Miaolingian (figure 4a). Together with the fact that the Miaolingian-occurring Tretocylichne and Cambroctoconus evolved novel characteristics mentioned above, the size increase in the Miaolingian may indicate that the premium on major structural innovation continued until the Late Cambrian Series 2.
Data accessibility. Data available from the Dryad Digital Repository: https://doi.org/10.5061/dryad.ffbg79cv8 [61]. The data are provided in electronic supplementary material [62].  There is a progressive increase in size of each element from the Ediacaran to the Miaolingian (a). The dramatic increase in the elemental volume between the Ediacaran and the Terreneuvian may reflect the increase in the predation pressure near the base of the Cambrian. A generally increasing trend shown in the wall thickness/aperture ratio (b) indicates the relative wall thickness also increased, probably in response to the continuous increase in the predation pressure at the Cambrian.