Published:18 August 2017https://doi.org/10.1098/rsfs.2016.0148
References
- 1
- 2Rescher N. 2004 Process philosophy, The Stanford encyclopedia of philosophy (Spring 2004 Edition) (ed. Edward N Zalta), http://plato.stanford.edu/archives/spr2004/entries/process-philosophy/ Google Scholar
- 3Dupré J. 2012 Processes of life: essays in the philosophy of biology. Oxford, UK: Oxford University Press. Crossref, Google Scholar
- 4Robinson H. 2014 Substance, The Stanford encyclopedia of philosophy (Spring 2014 Edition) (ed. Edward N Zalta), https://plato.stanford.edu/archives/spr2014/entries/substance/ Google Scholar
- 5Dupré J. 2010 The polygenomic organism. In Nature after the genome (eds Parry S, Dupré J), pp. 19–31. Malden, MA: Blackwell Publishing, Sociological Review Monograph series. Google Scholar
- 6Noble D. 2017 Evolution viewed from physics, physiology and medicine. Interface Focus 7, 20160159. (doi:10.1098/rsfs.2016.0159) Link, Web of Science, Google Scholar
- 7Machamer PK, Darden L, Craver CF. 2000 Thinking about mechanisms. Philos. Sci. 67, 1–25. (doi:10.1086/392759) Crossref, Web of Science, Google Scholar
- 8Craver CF, Darden L. 2013 In search of mechanisms: discoveries across the life sciences. Chicago, IL: University of Chicago Press. Crossref, Google Scholar
- 9Craver CF, Bechtel W. 2007 Top-down causation without top-down causes. Biol. Philos. 22, 547–563. (doi:10.1007/s10539-006-9028-8) Crossref, Web of Science, Google Scholar
- 10Bechtel W. 2017 Explicating top-down causation using networks and dynamics. Philos. Sci. 84, 253–274. (doi:10.1086/690718) Crossref, Web of Science, Google Scholar
- 11DiFrisco J. 2016 Time scales and levels of organization. Erkenntnis. (doi:10.1007/s10670-016-9844-4) Web of Science, Google Scholar
- 12Simpson GG. 1961 Principles of animal taxonomy. New York, NY: Columbia University Press. Crossref, Google Scholar
- 13Ghiselin M. 1974 A radical solution to the species problem. Syst. Zool. 23, 536–544. (doi:10.2307/2412471) Crossref, Google Scholar
- 14Hull D. 1978 A matter of individuality. Philos. Sci. 45, 335–360. (doi:10.1086/288811) Crossref, Web of Science, Google Scholar
- 15Ruse M. 1987 Biological species: natural kinds, individuals, or what? Br. J. Philos. Sci. 38, 225–242. (doi:10.1093/bjps/38.2.225) Crossref, Web of Science, Google Scholar
- 16Griffiths PE. 1999 Squaring the circle: natural kinds with historical essences. In Species: new interdisciplinary studies (ed. Wilson RA). Cambridge, MA: MIT Press. Google Scholar
- 17Hull D. 1999 On the plurality of species: questioning the party line. In Species: new interdisciplinary essays (ed. Wilson RA), pp. 3–20. Cambridge, MA: MIT Press. Google Scholar
- 18Dupré J. 1994 The philosophical basis of biological classification. Review of Marc Ereshefsky (ed.), The units of evolution: essays on the nature of species. Stud. Hist. Philos. Sci. 25, 271–279. (doi:10.1016/0039-3681(94)90032-9) Google Scholar
- 19Dupré J. 2001 In defence of classification. Stud. Hist. Philos. Biol. Biomed. Sci. 32, 203–219. (doi:10.1016/S1369-8486(01)00003-6) Crossref, Google Scholar
- 20Reydon T. 2003 Species are individuals or are they? Philos. Sci. 70, 49–56. (doi:10.1086/367868) Crossref, Web of Science, Google Scholar
- 21Reiss J. 2009 Not by design: retiring Darwin’s watchmaker. Berkeley, CA: University of California Press. Crossref, Google Scholar
- 22Wilkins JS, Hull D. 2014 Replication and reproduction, The Stanford encyclopedia of philosophy (Spring 2014 Edition), (ed. Edward N Zalta), http://plato.stanford.edu/archives/spr2014/entries/replication/. Google Scholar
- 23
- 24Laland K, Odling-Smee J, Endler J. 2017 Niche construction, sources of selection and trait coevolution. Interface Focus 7, 20160147. (doi:10.1098/rsfs.2016.0147) Link, Web of Science, Google Scholar
- 25Odling-Smee FJ, Laland KN, Feldman MW. 2003 Niche construction: the neglected process in evolution. Princeton, NJ: Princeton University Press. Google Scholar
- 26Jones CG, Lawton JH, Shachak M. 1994 Organisms as ecosystem engineers. Oikos 69, 373–386. (doi:10.2307/3545850) Crossref, Web of Science, Google Scholar
- 27
- 28Paterson HEH. 1985 The recognition concept of species. In Species and speciation, vol. 4 (ed. Vrba ES), pp. 21–29. Transvaal Mus. Monogr. Pretoria, South Africa: Transvaal Museum. Google Scholar
- 29Pennisi E. 2016 Shaking up the tree of life. Science 354, 817–821. (doi:10.1126/science.354.6314.817) Crossref, PubMed, Web of Science, Google Scholar
- 30Mallet J. 2008 Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Phil. Trans. R. Soc. B 363, 2971–2986. (doi:10.1098/rstb.2008.0081) Link, Web of Science, Google Scholar
- 31Darwin C. 1881 The formation of vegetable mould, through the action of worms, with observations on their habits. New York, NY: D. Appleton. Crossref, Google Scholar
- 32West Eberhard MJ. 2003 Developmental plasticity and evolution. New York, NY: Oxford University Press. Crossref, Google Scholar
- 33Wolf JB, Wade MJ. 2009 What are maternal effects (and what are they not)? Phil. Trans. R. Soc. B 364, 1107–1115. (doi:10.1098/rstb.2008.0238) Link, Web of Science, Google Scholar
- 34Stotz K. 2017 Why developmental niche construction is not selective niche construction and why it matters. Interface Focus 7, 20160157. (doi:10.1098/rsfs.2016.0157) Link, Web of Science, Google Scholar
- 35Meaney MJ, Szyf M, Seckl JR. 2007 Epigenetic mechanisms of perinatal programming of hypothalamic–pituitary–adrenal function and health. Trends Mol. Med. 13, 269–277. (doi:10.1016/j.molmed.2007.05.003) Crossref, PubMed, Web of Science, Google Scholar
- 36Champagne FA, Meaney MJ. 2006 Stress during gestation alters postpartum maternal care and the development of the offspring in a rodent model. Biol. Psychiatry 59, 1227–1235. (doi:10.1016/j.biopsych.2005.10.016) Crossref, PubMed, Web of Science, Google Scholar
- 37Sober E, Wilson DS. 1999 Unto others: the evolution and psychology of unselfish behavior. Cambridge, MA: Harvard University Press. Google Scholar
- 38
- 39Butterfield NJ. 2000 Bangiomorpha pubescens n. gen., n. sp.: implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes. Paleobiology 26, 386–404. (doi:10.1666/0094-8373(2000)026<0386:BPNGNS>2.0.CO;2) Crossref, Web of Science, Google Scholar
- 40Oyama S. 1985 The ontogeny of information: developmental systems and evolution. Durham, NC: Duke University Press. Google Scholar
- 41Oyama S, Griffiths PE, Gray RD. 2001 Cycles of contingency: developmental systems and evolution. Cambridge, MA: MIT Press. Google Scholar
- 42Walsh D. 2015 Organisms, agency and evolution. Cambridge, UK: Cambridge University Press. Crossref, Google Scholar
- 43Russell ES. 1924 The study of living things: prolegomena to a functional biology. London, UK: Methuen. Google Scholar
- 44
- 45Bertalanffy L. 1952 Problems of life: an evaluation of modern biological and scientific thought. New York, NY: Harper & Brothers. Google Scholar